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Of course the commands that can be executed depend on the operating system on which the YADE Client is running.
See also Transfer to Multiple Destinations.
Securely Specifying Transfer Credentials
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If credentials are a concern, then we recommend the use of SFTP with PPK whenever possible, which, of course depends on the configuration of the server.
Further Information
See also our JadeParameterReference.
Using YADE as a component via the API is described in our JadeAPIReference.